Expand description
Common primitive bioinformatics vocabulary reexports.
Structs§
- Accession
- A non-empty sequence accession.
- Aligned
Sequence - A non-empty aligned sequence string that may contain gaps.
- Alignment
Id - A non-empty alignment identifier.
- Alignment
Score - A numeric alignment score.
- Alignment
Summary - Summary metadata for an alignment.
- Alphabet
Symbol Set - Deterministic set of biological alphabet symbols.
- Amino
Acid Code - A validated one-letter amino-acid code.
- Annotation
- A single annotation key-value pair.
- Annotation
Key - A non-empty annotation key.
- Annotation
Set - A deterministic annotation collection.
- Annotation
Value - A plain string annotation value.
- BioAlphabet
- A biological alphabet with a descriptive kind and symbol set.
- BioSequence
- Owned biological sequence data with a descriptive kind.
- Feature
Id - A non-empty feature identifier.
- Feature
Name - A non-empty feature name.
- Genomic
Position - A genomic position value.
- Genomic
Range - A genomic interval with explicit coordinate assumptions.
- Motif
Hit - A motif hit with optional sequence or genomic location.
- Motif
Name - A non-empty motif name.
- Motif
Pattern - A non-empty plain motif pattern.
- Residue
- A single residue symbol with a descriptive kind.
- Residue
Symbol - A single residue symbol.
- Sequence
Feature - A sequence or genomic feature with optional range and deterministic attributes.
- Sequence
Id - A non-empty sequence identifier.
- Sequence
Length - A sequence length value.
- Sequence
Text - Owned biological sequence text.
- Versioned
Accession - A sequence accession with an optional descriptive version component.
Enums§
- Alignment
Kind - A descriptive alignment kind.
- Alignment
Value Error - Error returned by alignment vocabulary constructors.
- Alphabet
Error - Error returned by alphabet constructors.
- Alphabet
Kind - A descriptive kind for a biological alphabet.
- Amino
Acid - A primitive amino-acid symbol.
- Amino
Acid Kind - A descriptive amino-acid kind.
- Amino
Acid Parse Error - Error returned when parsing amino-acid symbols.
- Annotation
KeyError - Error returned by annotation key constructors.
- Coordinate
System - Coordinate-system vocabulary for genomic ranges.
- Feature
Kind - A descriptive feature kind.
- Feature
Value Error - Error returned by feature vocabulary constructors.
- Genomic
Range Error - Error returned by genomic range constructors.
- Motif
Kind - A descriptive motif kind.
- Motif
Value Error - Error returned by motif vocabulary constructors.
- Nucleotide
- A primitive nucleotide symbol.
- Nucleotide
Kind - A descriptive nucleotide kind.
- Nucleotide
Parse Error - Error returned when parsing nucleotide symbols.
- Nucleotide
Sequence Kind - A descriptive nucleotide sequence kind.
- Residue
Error - Error returned by residue vocabulary constructors.
- Residue
Kind - A descriptive kind for a biological residue.
- Sequence
Error - Error returned by sequence vocabulary constructors.
- Sequence
IdError - Error returned by sequence identifier constructors.
- Sequence
Kind - A descriptive kind for biological sequence text.
- Sequence
Source - Descriptive source labels for sequence identifiers.
- Strand
- Strand orientation vocabulary.