Struct BioAlphabet 

pub struct BioAlphabet { /* private fields */ }

A biological alphabet with a descriptive kind and symbol set.

Implementations

impl BioAlphabet

pub const fn new(kind: AlphabetKind, symbols: AlphabetSymbolSet) -> BioAlphabet

Creates an alphabet from a kind and symbol set.

pub fn dna() -> BioAlphabet

Returns the simple DNA alphabet A, C, G, T.

pub fn rna() -> BioAlphabet

Returns the simple RNA alphabet A, C, G, U.

pub fn protein() -> BioAlphabet

Returns the common protein alphabet.

pub fn dna_with_ambiguity() -> BioAlphabet

Returns a DNA alphabet including common ambiguity symbols.

pub fn rna_with_ambiguity() -> BioAlphabet

Returns an RNA alphabet including common ambiguity symbols.

pub fn protein_with_ambiguity() -> BioAlphabet

Returns a protein alphabet including common ambiguity symbols.

pub fn custom( kind: impl Into<String>, symbols: impl AsRef<str>, ) -> Result<BioAlphabet, AlphabetError>

Creates a custom alphabet.

Errors

Returns AlphabetError::EmptySymbolSet when no symbols are supplied.

pub const fn kind(&self) -> &AlphabetKind

Returns the descriptive alphabet kind.

pub const fn symbols(&self) -> &AlphabetSymbolSet

Returns the alphabet symbols.

pub fn contains(&self, symbol: char) -> bool

Returns true when the symbol is present in the alphabet.

pub fn contains_all(&self, text: impl AsRef<str>) -> bool

Returns true when every character in the supplied text is present in the alphabet.

Trait Implementations

impl Clone for BioAlphabet

fn clone(&self) -> BioAlphabet

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for BioAlphabet

fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

Formats the value using the given formatter.

impl PartialEq for BioAlphabet

fn eq(&self, other: &BioAlphabet) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Eq for BioAlphabet

impl StructuralPartialEq for BioAlphabet